PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1542_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 155aa    MW: 17322.1 Da    PI: 10.4178
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1542_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.4e-08846947
                                        HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                     Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                        + +++ + + +G+g+W+ I+r +   +t+ q+ s+ qky
  cra_locus_1542_iso_1_len_701_ver_3  8 QRRFLLGLQAHGKGDWRNISRNFVRSKTPTQVASHAQKY 46
                                        679999******************9*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015573.9E-12750IPR006447Myb domain, plants
SuperFamilySSF466893.59E-10750IPR009057Homeodomain-like
CDDcd001671.13E-4847No hitNo description
Gene3DG3DSA:1.10.10.606.3E-5946IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
XLGCFHLQRR FLLGLQAHGK GDWRNISRNF VRSKTPTQVA SHAQKYFLRQ LSGGKDKKRP  60
SIHDITTVHL PNTSPSDDNK SPNSSDKSAP SASSKLLLDW NNSNDGLLMV FDSNHGNESM  120
ESLFDIASRG HRYAANICTT ANSRFHIQPT KYVHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275014.16e-53PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H72e-37DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A068V2E51e-73A0A068V2E5_COFCA; Uncharacterized protein
STRINGVIT_13s0019g03370.t012e-52(Vitis vinifera)